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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
accessible chromatin
3
target gene predictions
2
binding sites
2
chromatin state
1
histone modifications
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
1
snATAC-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2
bronchial epithelial cell
1
bronchial goblet cell
Organ
94
epithelium
93
kidney
89
brain
81
musculature of body
72
lung
64
connective tissue
62
intestine
61
heart
58
limb
48
vasculature
37
blood vessel
36
large intestine
36
skin of body
33
extraembryonic component
28
embryo
28
pancreas
27
bodily fluid
26
stomach
25
blood
21
liver
20
small intestine
16
mammary gland
16
placenta
16
ureter
15
adrenal gland
15
bone element
14
prostate gland
13
adipose tissue
12
artery
11
eye
11
thymus
10
penis
9
esophagus
8
gonad
8
lymph node
8
spinal cord
6
nerve
6
spleen
6
vein
5
lymphoid tissue
5
thyroid gland
4
mouth
4
ovary
4
testis
4
uterus
3
bronchus
3
skeleton
2
bone marrow
2
breast
2
lymphatic vessel
2
tongue
2
urinary bladder
2
vagina
1
nose
Life stage
2
unknown
Date released
2
September, 2022
1
February, 2024
Software used
2
chromhmm
1
deltasvm
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR702JKN
released
Annotation file set
: Chromatin states for BSS00153 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524OJC
released
Annotation file set
: Chromatin states for BSS00150 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR915JYD
released
Annotation file set
: Variant allelic effects annotation of Airway goblet cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP