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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
48
gene expression
37
target gene predictions
33
differential activity
32
accessible chromatin
24
candidate regulatory elements
11
variant allelic effects
10
eQTL
6
histone modifications
5
binding sites
4
chromatin state
2
Fine-mapped variants
2
sQTL
2
variant to gene
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
4
bed bed3+
2
bigBed bed9
File set status
4
released
Genome assembly (visualization)
17
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
3
islet of Langerhans
1
pancreas
Organ
7
connective tissue
6
brain
4
intestine
4
pancreas
3
epithelium
3
large intestine
3
liver
3
musculature of body
2
adipose tissue
2
blood
2
bodily fluid
1
blood vessel
1
bone element
1
bone marrow
1
embryo
1
lung
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
vasculature
1
vein
Date released
3
August, 2017
1
April, 2019
Software used
4
chromhmm
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
assembly!
GRCh38
Showing 4 of 4 results
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Download
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR608480
released
Annotation file set
: ChromHMM 18-state model for Pancreas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP