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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
88
accessible chromatin
80
candidate regulatory elements
78
target gene predictions
49
gene expression
31
binding sites
25
histone modifications
21
eQTL
16
variant allelic effects
14
differential activity
7
chromatin state
6
Fine-mapped variants
2
caQTL
2
pQTL
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
bed bed9
7
bed bed3+
2
bigBed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
tissue
1
primary cell
Biosample term
4
adipocyte
1
fibroblast of lung
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
Organ
7
connective tissue
6
brain
5
heart
4
intestine
4
pancreas
3
epithelium
3
large intestine
3
liver
3
musculature of body
2
adipose tissue
2
blood
2
bodily fluid
1
blood vessel
1
bone element
1
bone marrow
1
embryo
1
lung
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
vasculature
1
vein
Date released
7
August, 2017
Software used
7
chromhmm
Lab
6
Stephen Parker, UMich
1
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
biosample_term_name!
AG09319 cell
files.file_type!
bed bed9
Showing 7 of 7 results
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Download
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR646989
released
Annotation file set
: ChromHMM 13-state model for fibroblast of lung
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR033945
released
Annotation file set
: ChromHMM 18-state model for Adipose Nuclei
Lab:
AMP-T2D consortium
Project:
AMP