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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
chromatin state
4
target gene predictions
3
binding sites
2
accessible chromatin
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
4
bed bed9
3
bed bed3+
2
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
5
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
7
endothelial cell of umbilical vein
Organ
265
epithelium
136
connective tissue
118
kidney
114
brain
101
musculature of body
86
lung
82
pancreas
80
intestine
77
heart
70
limb
69
vasculature
68
eye
54
blood vessel
48
skin of body
46
large intestine
42
extraembryonic component
41
liver
40
embryo
39
bodily fluid
37
blood
32
stomach
30
bone element
23
small intestine
22
mammary gland
21
adrenal gland
20
placenta
19
artery
18
prostate gland
17
adipose tissue
17
ureter
16
lymph node
13
gonad
13
penis
13
thymus
11
esophagus
11
skeleton
10
spinal cord
8
spleen
7
lymphoid tissue
7
nerve
7
uterus
7
vein
6
lymphatic vessel
6
ovary
6
testis
6
thyroid gland
5
bronchus
5
mouth
4
bone marrow
3
breast
3
tongue
3
urinary bladder
2
nose
2
vagina
1
trachea
Life stage
3
newborn
Date released
2
January, 2020
2
September, 2022
1
August, 2017
1
June, 2020
1
May, 2020
Software used
5
chromhmm
1
macs
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
biosample_term_name!
left kidney
Showing 7 of 7 results
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Download
FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR690SAR
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HUVEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR603NLX
released
Annotation file set
: Accessible chromatin of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP