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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
4
chromatin state
4
target gene predictions
3
accessible chromatin
2
binding sites
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
3
bed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
cell line
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
18
monocyte
17
muscle of arm
17
muscle of leg
16
B cell
16
endothelial cell
16
fibroblast
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
macrophage
13
muscle of back
12
adipocyte
12
right lung
12
thymus
11
T cell
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pericyte cell
11
renal pelvis
11
right kidney
10
hepatocyte
10
islet of Langerhans
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
erythroblast
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
mature neutrophil
7
natural killer cell
7
pancreatic acinar cell
7
pancreatic alpha cell
7
skeletal muscle satellite cell
7
tibial nerve
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
foreskin keratinocyte
5
gastrocnemius medialis
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
ovary
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
testis
4
thoracic aorta
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
Life stage
1
adult
1
child
1
unknown
Date released
3
September, 2022
2
June, 2020
1
August, 2017
1
May, 2020
Software used
4
chromhmm
2
macs
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR575YQR
released
Annotation file set
: Chromatin states for BSS00390 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584RLR
released
Annotation file set
: Chromatin states for BSS01574 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR816QKV
released
Annotation file set
: Chromatin states for BSS01573 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR892DHE
released
Annotation file set
: Accessible chromatin annotation for Muscle HSMM from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877OWF
released
Annotation file set
: Accessible chromatin annotation for Epidermis Fibrobl GM03348 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326PAN
released
Annotation file set
: Accessible chromatin of skeletal muscle myoblast ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR558538
released
Annotation file set
: ChromHMM 13-state model for skeletal muscle myoblast
Lab:
Stephen Parker, UMich
Project:
AMP