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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
59
stomach
58
heart
49
lung
49
muscle of arm
47
brain
45
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
CD4-positive, alpha-beta memory T cell
22
B cell
22
liver
21
spinal cord
21
spleen
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
sigmoid colon
14
K562
14
MCF-7
14
trophoblast cell
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
heart right ventricle
11
psoas muscle
10
Peyer's patch
10
adipocyte
10
fibroblast of lung
10
layer of hippocampus
10
neurosphere
10
temporal lobe
10
testis
10
tibial nerve
10
upper lobe of left lung
9
T-helper 1 cell
9
caudate nucleus
9
foreskin fibroblast
9
natural killer cell
9
neural progenitor cell
9
retina
9
skeletal muscle tissue
8
CD8-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
angular gyrus
8
aorta
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
pancreas
8
regulatory T cell
8
right renal pelvis
8
substantia nigra
7
ascending aorta
7
breast epithelium
7
cardiac muscle cell
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
mature neutrophil
7
mesenchymal stem cell
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
stomach smooth muscle
7
thoracic aorta
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
bronchial epithelial cell
6
chorion membrane
6
coronary artery
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
CD14-positive, CD16-negative classical monocyte
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
embryonic stem cell
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
right atrium auricular region
5
right cardiac atrium
5
urinary bladder
4
Brodmann (1909) area 46
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
4
T-cell
4
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
germinal matrix
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
Organ
3
intestine
3
large intestine
3
musculature of body
Life stage
2
adult
Date released
2
September, 2022
1
August, 2017
Software used
2
chromhmm
1
r
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_term_name!
heart left ventricle
Showing 3 of 3 results
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Download
FileSet
DSR810KDL
released
Annotation file set
: Candidate regulatory elements for BSS01475 rectum smooth muscle tissue from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR614UTJ
released
Annotation file set
: Chromatin states for BSS01475 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR802656
released
Annotation file set
: ChromHMM 13-state model for rectal smooth muscle
Lab:
Stephen Parker, UMich
Project:
AMP