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Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
7
target gene predictions
1
chromatin state
1
variant allelic effects
Annotation Category
7
Target gene links
1
cis-regulatory elements
Annotation type Category
7
ATAC-seq
4
DNase-seq
4
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
cell line
Biosample term
2
fibroblast of lung
2
type II pneumocyte
1
A549
1
IMR-90
1
PC-9
1
type I pneumocyte
Organ
75
epithelium
40
connective tissue
29
pancreas
20
brain
18
intestine
12
heart
12
musculature of body
11
large intestine
11
skin of body
10
pituitary gland
8
lung
7
stomach
6
adrenal gland
6
blood
6
bodily fluid
6
embryo
6
liver
6
mammary gland
5
vasculature
4
adipose tissue
4
blood vessel
4
small intestine
3
extraembryonic component
3
limb
3
uterus
2
artery
2
esophagus
2
gonad
2
ovary
2
prostate gland
2
thyroid gland
2
vein
1
bone element
1
bone marrow
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
penis
1
placenta
1
spinal cord
1
spleen
1
thymus
Date released
4
May, 2021
3
November, 2021
1
August, 2017
Software used
7
abc
1
chromhmm
Lab
AMP-T2D consortium
4
Jesse Engreitz, Stanford University
3
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
5
AMP
3
ENCODE
RFA
5
AMP
3
ENCODE3
lab.title!
AMP-T2D consortium
Showing 8 of 8 results
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Download
FileSet
DSR588HKS
released
Annotation file set
: Target gene predictions of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR775ZRO
released
Annotation file set
: Target gene predictions of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR923OSI
released
Annotation file set
: Target gene predictions of Alveolar Type 1 (AT1) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR988JBC
released
Annotation file set
: enhancer-gene predicton of PC-9-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR895REE
released
Annotation file set
: enhancer-gene predicton of IMR90-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR319ZJZ
released
Annotation file set
: enhancer-gene predicton of fibroblast_of_lung-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR646989
released
Annotation file set
: ChromHMM 13-state model for fibroblast of lung
Lab:
Stephen Parker, UMich
Project:
AMP