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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
23
target gene predictions
7
candidate regulatory elements
7
chromatin state
2
binding sites
1
accessible chromatin
1
histone modifications
0
Fine-mapped variants
0
differential activity
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
6
bed bed9
1
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
21
heart
19
stomach
18
A549
18
brain
16
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
K562
7
body of pancreas
7
caudate nucleus
7
induced pluripotent stem cell
7
mature neutrophil
7
spinal cord
7
tibial nerve
6
adipocyte
6
adipose tissue
6
ascending aorta
6
coronary artery
6
left cardiac atrium
6
mononuclear cell
6
spleen
6
substantia nigra
6
tibial artery
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
cerebellum
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
frontal cortex
5
heart right ventricle
5
islet of Langerhans
5
omental fat pad
5
right atrium auricular region
5
sigmoid colon
5
subcutaneous adipose tissue
5
temporal lobe
5
trophoblast cell
4
Ammon's horn
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
neural progenitor cell
4
ovary
4
psoas muscle
4
putamen
4
right lobe of liver
4
thyroid gland
4
transverse colon
3
C1 segment of cervical spinal cord
3
CD4-positive, alpha-beta T cell
3
EndoC_BH1
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
amygdala
3
anterior cingulate cortex
3
cerebellum (Hemisphere)
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
duodenal mucosa
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
left ventricle myocardium
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mucosa of rectum
3
naive T cell
3
natural killer cell
3
neurosphere
3
nucleus accumbens
3
pancreas
3
pancreatic MUC5B+ductal cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic alpha+beta cell
3
pancreatic beta cell
3
pancreatic cycling alpha cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
pancreatic stellate cell
3
regulatory T cell
3
retina
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
testis
3
thoracic aorta
3
upper lobe of left lung
2
22Rv1
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
Brodmann (1909) area 46
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
ESC derived cell line
2
Fibroblast
2
GM12878
2
Glomerular Capillary Endothelial Cell
2
H1-hESC
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
KARPAS-422 cell
2
LNCaP clone FGC
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
NAMALWA cell
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
SK-N-DZ
2
SK-N-SH
2
T Cell
2
T47D
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
Disease term
6
Philadelphia-positive myelogenous leukemia
Organ
7
blood
7
bodily fluid
Life stage
6
adult
Date released
6
September, 2022
1
August, 2017
Software used
7
chromhmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
Showing 7 of 7 results
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Download
FileSet
DSR339UZM
released
Annotation file set
: Chromatin states for BSS01059 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188RKL
released
Annotation file set
: Chromatin states for BSS01057 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR776FEP
released
Annotation file set
: Chromatin states for BSS01056 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR252FIU
released
Annotation file set
: Chromatin states for BSS01039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR680EDW
released
Annotation file set
: Chromatin states for BSS01038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867LQE
released
Annotation file set
: Chromatin states for BSS00762 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP