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Schema
Citing CMDGA
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Annotation type
9
candidate regulatory elements
4
chromatin state
4
target gene predictions
3
binding sites
2
accessible chromatin
2
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Biosample term
2
NT2-D1 cell
2
testis
Organ
284
epithelium
190
kidney
79
connective tissue
57
vasculature
53
pancreas
47
bodily fluid
46
blood
41
blood vessel
37
liver
35
brain
26
heart
23
embryo
20
skin of body
18
musculature of body
15
adipose tissue
14
artery
12
bone element
12
lymph node
12
mammary gland
10
lung
9
intestine
9
prostate gland
8
large intestine
7
eye
7
limb
7
penis
6
uterus
5
gonad
5
lymphatic vessel
4
testis
4
vein
3
extraembryonic component
3
placenta
3
spinal cord
2
bone marrow
2
bronchus
2
esophagus
2
nerve
2
spleen
2
stomach
2
trachea
1
adrenal gland
1
breast
1
lymphoid tissue
1
mouth
1
ovary
1
pericardium
1
pituitary gland
1
thymus
1
thyroid gland
1
tongue
1
urinary bladder
1
vagina
Life stage
1
adult
Date released
2
February, 2021
1
March, 2024
1
October, 2022
Software used
2
macs
1
chromhmm
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
lab.title!
Katalin Susztak, Upenn
Showing 4 of 4 results
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Download
FileSet
DSR562FVN
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Testis.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR209NBR
released
Annotation file set
: Binding sites annotation for NT2-D1 cell (NT2-D1) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR556ACO
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR295KRU
released
Annotation file set
: Binding sites annotation for Gonad Testis from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP