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Citing CMDGA
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Annotation type
904
chromatin state
683
gene expression
167
differential activity
159
eQTL
74
Fine-mapped variants
16
variant allelic effects
10
accessible chromatin
4
sQTL
2
hQTL
2
variant to gene
1
histone modifications
1
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
ChIP-seq
Available data
bed bed3+
2
tsv
File set status
3
released
Organism
3
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
Biosample term
2
islet of Langerhans
1
neural progenitor cell
Organ
2
pancreas
Date released
2
March, 2023
1
August, 2021
Software used
2
qTLtools
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
files.file_type!
bed bed3+
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR680UFD
released
Annotation file set
: Histone modifications annotation of H3K27me3 ChIPseq of neural progenitor cells differentiated into neural lineage until appropriate time points (6 hours).
Lab:
AMP-T2D consortium
Project:
AMP