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Schema
Citing CMDGA
Clear Filters
Annotation type
1571
candidate regulatory elements
1235
target gene predictions
948
histone modifications
891
chromatin state
773
binding sites
694
accessible chromatin
86
variant allelic effects
72
Fine-mapped variants
60
eQTL
11
gene expression
5
caQTL
5
hQTL
3
meQTL
3
pQTL
3
sQTL
2
other
2
variant to gene
Annotation Category
8
Genetic variant effects
Annotation type Category
4
snATAC-seq
3
quantitative proteomics
1
ATAC-seq
Available data
7
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
6
GRCh38
Organism
8
Homo sapiens
Biosample type
4
primary cell
4
tissue
Biosample term
2
cartilage tissue
1
cerebrospinal fluid
1
liver
1
mesenchymal stem cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
3
connective tissue
2
musculature of body
1
bodily fluid
epithelium
1
liver
Life stage
3
adult
Date released
4
October, 2022
3
August, 2021
1
May, 2022
Software used
5
eigenmt
5
rasqual
2
fastqtl
2
peer
1
r
Lab
4
Stephen Parker, UMich
2
ITG
1
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
6
AMP
2
ITG
RFA
4
AMP2
2
AMP
2
ITG
organ_slims!
epithelium
Showing 8 of 8 results
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Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP