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Citing CMDGA
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Annotation type
1671
candidate regulatory elements
1070
target gene predictions
977
histone modifications
907
chromatin state
810
binding sites
571
accessible chromatin
445
gene expression
159
eQTL
82
variant allelic effects
74
Fine-mapped variants
6
differential activity
5
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
quantitative proteomics
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
tissue
Biosample term
1
cerebrospinal fluid
1
myocyte
Organ
1
bodily fluid
Life stage
1
adult
Date released
1
August, 2021
1
February, 2021
Software used
1
altius-index
1
r
Lab
2
AMP-T2D consortium
2
ITG
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP