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Citing CMDGA
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Annotation type
270
accessible chromatin
171
gene expression
139
target gene predictions
119
differential activity
3
eQTL
2
caQTL
2
pQTL
1
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
2
quantitative proteomics
1
SNP-SELEX
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
2
cartilage tissue
1
purified protein and synthetic DNA oligo binding assay
Organ
2
connective tissue
Life stage
2
adult
Date released
2
August, 2021
1
February, 2023
Software used
2
fastqtl
2
peer
1
betacells_cytokines_t1d
Lab
2
ITG
1
Kyle Gaulton, UCSD
Project
AMP
2
ITG
1
T1D
RFA
2
ITG
1
T1D
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AMP
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FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG