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Citing CMDGA
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Annotation type
1669
candidate regulatory elements
1178
target gene predictions
977
histone modifications
939
chromatin state
864
accessible chromatin
811
binding sites
409
gene expression
162
eQTL
84
variant allelic effects
74
Fine-mapped variants
52
differential activity
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
Available data
1
tsv
File set status
1
released
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
1
myocyte
Date released
1
February, 2021
Software used
1
altius-index
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
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FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP