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Schema
Citing CMDGA
Clear Filters
Annotation type
840
histone modifications
837
candidate regulatory elements
718
binding sites
177
gene expression
11
accessible chromatin
3
eQTL
2
target gene predictions
1
representative DNase hypersensitivity sites
1
variant allelic effects
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
DNase-seq
Available data
2
bed bed3+
2
bigBed narrowPeak
2
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
1
myocyte
1
pancreatic alpha cell
1
pancreatic beta cell
Organ
2
epithelium
2
pancreas
Life stage
2
adult
Date released
834
September, 2022
174
February, 2024
139
May, 2021
111
November, 2021
44
March, 2020
28
January, 2021
18
May, 2020
5
September, 2023
3
February, 2021
1
January, 2020
1
January, 2022
Software used
2
cicero
1
altius-index
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
differential activity
Showing 3 of 3 results
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Download
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR376KYK
released
Annotation file set
: pancreatic beta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP