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Clear Filters
Annotation type
  • 1669candidate regulatory elements
  • 1178target gene predictions
  • 977histone modifications
  • 939chromatin state
  • 839accessible chromatin
  • 811binding sites
  • 395gene expression
  • 161eQTL
  • 83variant allelic effects
  • 72Fine-mapped variants
  • 8caQTL
  • 5hQTL
  • 4sQTL
  • 3meQTL
  • 3other
  • 3pQTL
  • 2variant to gene
  • 1representative DNase hypersensitivity sites
Annotation Category
  • 4Genetic variant effects
Annotation type Category
  • 4RNA-seq
  • 1Expression arrays
Available data
  • 1bed bed3+
File set status
  • 4released
Genome assembly (visualization)
  • 3hg19
Organism
  • 4Homo sapiens
Biosample type
  • 3primary cell
  • 1tissue
Biosample term
  • 1islet of Langerhans
  • 1monocyte
  • 1naive thymus-derived CD4-positive, alpha-beta T cell
  • 1neutrophil
Organ
  • 1pancreas
Life stage
  • 4adult
Date released
  • 3May, 2021
  • 1August, 2021
Software used
  • 3limix
  • 3sqtlseeker
  • 1matrix-eQTL
Lab
  • 4AMP-T2D consortium
Project
  • 4AMP
RFA
  • 4AMP

Showing 4 of 4 results

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  • FileSet

    DSR276ICN

    released

    Annotation file set: sQTL annotation of islet of Langerhans from PMID:25201977
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR631VBI

    released

    Annotation file set: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR661WZX

    released

    Annotation file set: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR337BHM

    released

    Annotation file set: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
    Lab: AMP-T2D consortium
    Project: AMP
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