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Citing CMDGA
Clear Filters
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
913
accessible chromatin
817
binding sites
683
gene expression
167
differential activity
166
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
4
variant to gene
pQTL
2
other
2
sQTL
1
representative DNase hypersensitivity sites
Annotation Category
2
Genetic variant effects
Annotation type Category
2
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
2
islet of Langerhans
Organ
2
pancreas
Life stage
1
adult
Date released
1
August, 2021
1
March, 2023
Software used
limix
3
sqtlseeker
1
matrix-eQTL
1
qTLtools
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type!
pQTL
software_used.software.name!
limix
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP