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Schema
Citing CMDGA
Clear Filters
Annotation type
1671
candidate regulatory elements
1354
target gene predictions
944
chromatin state
895
accessible chromatin
891
histone modifications
816
binding sites
668
gene expression
167
differential activity
167
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
4
sQTL
4
variant to gene
3
hQTL
3
other
3
pQTL
2
meQTL
1
representative DNase hypersensitivity sites
Annotation Category
7
Genetic variant effects
Annotation type Category
4
RNA-seq
3
quantitative proteomics
1
Expression arrays
Available data
3
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
5
tissue
2
primary cell
Biosample term
2
cartilage tissue
2
islet of Langerhans
1
cerebrospinal fluid
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
connective tissue
2
pancreas
1
bodily fluid
Life stage
6
adult
Date released
4
August, 2021
2
May, 2021
1
March, 2023
Software used
2
fastqtl
2
limix
2
peer
2
sqtlseeker
1
matrix-eQTL
1
qTLtools
1
r
Lab
5
AMP-T2D consortium
2
ITG
Project
5
AMP
2
ITG
RFA
5
AMP
2
ITG
biosample_term_name!
monocyte
Showing 7 of 7 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP