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Annotation type
904
chromatin state
683
gene expression
167
differential activity
159
eQTL
74
Fine-mapped variants
16
variant allelic effects
10
accessible chromatin
4
sQTL
2
hQTL
2
variant to gene
1
histone modifications
1
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
4
RNA-seq
1
DNase-seq
Available data
bed bed3+
1
tsv
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
1
islet of Langerhans
1
monocyte
1
myocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
3
adult
Date released
3
May, 2021
1
February, 2021
1
March, 2023
Software used
3
limix
3
sqtlseeker
1
altius-index
1
qTLtools
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
Showing 5 of 5 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP