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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
eQTL
11
gene expression
6
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
1
pCHi-C
Available data
4
bed bed3+
1
bigBed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
41
heart
40
stomach
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
kidney
29
muscle of leg
29
placenta
27
large intestine
26
left lung
26
muscle of back
25
thymus
22
right lung
20
right kidney
19
liver
18
left kidney
18
renal cortex interstitium
18
renal pelvis
15
heart left ventricle
15
spinal cord
14
adipose tissue
14
spleen
12
psoas muscle
12
sigmoid colon
10
heart right ventricle
10
ovary
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
thyroid gland
9
transverse colon
8
aorta
8
chorionic villus
8
endocrine pancreas
8
pancreas
7
caudate nucleus
7
layer of hippocampus
7
left cardiac atrium
7
temporal lobe
7
tibial nerve
6
Peyer's patch
6
angular gyrus
6
chorion membrane
6
coronary artery
6
retina
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
ascending aorta
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
esophagus
5
mucosa of rectum
5
right cardiac atrium
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
Brodmann (1909) area 46
4
cerebellum
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
frontal cortex
4
islet of Langerhans
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
muscle layer of colon
4
muscle layer of duodenum
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
tongue
4
urinary bladder
4
vagina
3
Ammon's horn
3
germinal matrix
3
rectum smooth muscle tissue
3
uterus
2
amnion
2
arm bone
2
cerebellar cortex
2
embryonic facial prominence
2
femur
2
gastroesophageal sphincter
2
germinal center
2
globus pallidus
2
inferior parietal cortex
2
leg bone
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of stomach
2
occipital lobe
2
pons
2
putamen
2
right lobe of liver
2
skin of body
2
superior temporal gyrus
2
umbilical cord
1
beige adipocyte
1
bladder (urinary bladder)
1
cardiac ventricle
1
dorsolateral prefrontal cortex
1
gastric (mucosa of stomach)
1
mid-frontal lobe
1
skeletal muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
white adipose tissue
Organ
4
pancreas
Life stage
1
adult
Date released
2
August, 2017
1
April, 2019
1
January, 2020
Software used
3
chromhmm
1
chicago
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR299XDW
released
Annotation file set
: Target gene prediction annotation derived from chromatin loops in islet pcHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR037617
released
Annotation file set
: Chromatin States from Gaulton lab at UCSD for islet
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP