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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
4
target gene predictions
3
differential activity
3
gene expression
1
variant allelic effects
0
eQTL
Annotation Category
4
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bigBed narrowPeak
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
20
heart
20
stomach
19
HFFc6
18
A549
18
brain
18
lung
17
small intestine
16
adrenal gland
16
liver
16
muscle of arm
15
kidney
15
placenta
14
islet of Langerhans
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
11
adipose tissue
11
right lung
10
hematopoietic multipotent progenitor cell
10
macrophage
10
pericyte cell
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
endothelial cell
8
heart left ventricle
8
smooth muscle cell
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
lymphocyte
7
psoas muscle
6
T cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
monocyte
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
regulatory T cell
6
sigmoid colon
6
subcutaneous adipose tissue
5
MCF-7
5
body of pancreas
5
caudate nucleus
5
heart right ventricle
5
natural killer cell
5
neural progenitor cell
5
neutrophil
5
pancreas
5
skeletal muscle tissue
5
substantia nigra
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
frontal cortex
4
gastrocnemius medialis
4
keratinocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic delta cell
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
HCT116
3
Peyer's patch
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
astrocyte
3
blood cell
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic alpha cell
3
pancreatic beta cell
3
prostate gland
3
skin fibroblast
3
trophoblast
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
cartilage tissue
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
foreskin fibroblast
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
microglial cell
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
nucleus accumbens
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
right cardiac atrium
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
temporal lobe
Organ
4
epithelium
4
pancreas
Life stage
1
adult
Date released
2
January, 2021
1
November, 2021
1
September, 2022
Software used
3
cicero
1
abc
Lab
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP
1
ENCODE3
annotation_type_category!
H3K27ac ChIP-Seq
Showing 4 of 4 results
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Download
FileSet
DSR803ULZ
released
Annotation file set
: Target gene predictions of Pancreatic Delta,Gamma cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR078DAN
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR092ALL
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP