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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
0
eQTL
Annotation Category
4
Target gene links
3
cis-regulatory elements
Annotation type Category
6
DNase-seq
5
ChIP-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
in vitro differentiated cells
Biosample term
62
stomach
60
HeLa-S3
57
heart
51
lung
49
muscle of arm
47
brain
47
small intestine
46
adrenal gland
44
kidney
42
placenta
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
liver
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
24
B cell
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
19
HFFc6
19
adipose tissue
19
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
foreskin keratinocyte
15
ovary
15
psoas muscle
14
body of pancreas
14
islet of Langerhans
14
thyroid gland
14
transverse colon
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
12
CD8-positive, alpha-beta T cell
12
chorionic villus
12
natural killer cell
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
macrophage
11
pancreas
11
pericyte cell
11
regulatory T cell
11
skeletal muscle tissue
11
testis
11
tibial nerve
10
GM12878
10
Peyer's patch
10
T cell
10
T-helper 1 cell
10
adipocyte
10
caudate nucleus
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
layer of hippocampus
10
neural progenitor cell
10
neurosphere
10
pituitary stalk
10
retina
10
smooth muscle cell
10
substantia nigra
10
upper lobe of left lung
9
T-helper 17 cell
9
T-helper 2 cell
9
mesenchymal stem cell
9
neutrophil
9
omental fat pad
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
coronary artery
8
dermis blood vessel endothelial cell
8
endothelial cell
8
esophagus
8
esophagus muscularis mucosa
8
esophagus squamous epithelium
8
fibroblast of dermis
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
right renal pelvis
8
subcutaneous adipose tissue
7
SK-N-SH
7
ascending aorta
7
cerebellum
7
epithelial cell of prostate
7
fibroblast of cardiac tissue
7
hepatocyte
7
mammary gland epithelial cell
7
monocyte
7
parathyroid adenoma
7
prostate gland
7
right atrium auricular region
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
temporal lobe
7
tibial artery
7
trophoblast
7
vagina
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast
6
fibroblast of breast
6
frontal cortex
6
gastroesophageal sphincter
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
lymphoblastoid cell line
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
putamen
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
uterus
5
Ammon's horn
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
colon epithelial cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
skin fibroblast
5
skin of body
5
subcutaneous abdominal adipose tissue
5
urinary bladder
4
A673
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
iPS DF 19.11
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
right lobe of liver
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
Organ
7
epithelium
7
liver
Life stage
3
embryonic
2
unknown
Date released
4
September, 2022
1
February, 2021
1
May, 2021
1
November, 2021
Software used
4
r
2
abc
1
encode-ccres
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
6
AMP
1
ENCODE
RFA
6
AMP
1
ENCODE3
Showing 7 of 7 results
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Download
FileSet
DSR201DTC
released
Annotation file set
: Candidate regulatory elements for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR654OFJ
released
Annotation file set
: Candidate regulatory elements for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR731RPD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hepatocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP