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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
0
eQTL
Annotation Category
4
Target gene links
2
Genetic variant effects
Annotation type Category
4
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
heart
22
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
18
adrenal gland
18
lung
18
small intestine
17
liver
17
muscle of arm
16
kidney
16
placenta
15
islet of Langerhans
14
common myeloid progenitor, CD34-positive
14
large intestine
14
macrophage
14
muscle of leg
14
thymus
13
adipose tissue
13
left lung
13
muscle of back
12
fibroblast
11
right kidney
11
right lung
10
B cell
10
endothelial cell
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
spinal cord
9
spleen
8
GM12878
8
H9
8
T cell
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
body of pancreas
7
coronary artery
7
lymphocyte
7
monocyte
7
ovary
7
pancreas
7
sigmoid colon
7
subcutaneous adipose tissue
7
tibial nerve
7
trophoblast cell
6
MCF-7
6
caudate nucleus
6
dendritic cell
6
heart right ventricle
6
hepatocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
right atrium auricular region
6
thyroid gland
6
tibial artery
6
transverse colon
5
CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
frontal cortex
5
gastrocnemius medialis
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
neural progenitor cell
5
neutrophil
5
pancreatic delta cell
5
putamen
5
retina
5
skeletal muscle tissue
5
substantia nigra
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
ascending aorta
4
astrocyte
4
cardiac muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
layer of hippocampus
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
skeletal muscle myoblast
4
skin of body
4
testis
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
blood cell
3
breast epithelium
3
chorion membrane
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
myofibroblast cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
prostate gland
3
right renal cortex interstitium
3
right renal pelvis
3
skin fibroblast
3
thoracic aorta
3
trophoblast
3
type B pancreatic cell
3
type II pneumocyte
3
upper lobe of left lung
3
uterus
3
vagina
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MIN6
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
Schwann cell
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
Organ
6
epithelium
6
liver
Life stage
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2024
1
May, 2020
1
May, 2021
1
November, 2021
Software used
2
abc
2
deltasvm
2
r
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
AMP
1
ENCODE
RFA
5
AMP
1
ENCODE3
Showing 6 of 6 results
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Download
FileSet
DSR926ULW
released
Annotation file set
: Target gene predictions for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR488RFU
released
Annotation file set
: Genetic variants with deltaSVM predictions in liver hepatocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP