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Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
17
accessible chromatin
15
gene expression
4
eQTL
2
hQTL
1
binding sites
1
meQTL
1
sQTL
1
target gene predictions
Annotation Category
4
Genetic variant effects
1
Target gene links
Annotation type Category
4
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
20
heart
20
stomach
19
HFFc6
18
A549
18
brain
18
lung
17
small intestine
16
adrenal gland
16
liver
16
muscle of arm
15
placenta
14
islet of Langerhans
14
kidney
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
11
adipose tissue
11
right lung
10
hematopoietic multipotent progenitor cell
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
heart left ventricle
8
macrophage
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
lymphocyte
7
psoas muscle
6
T cell
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
sigmoid colon
5
MCF-7
5
body of pancreas
5
caudate nucleus
5
heart right ventricle
5
monocyte
5
neural progenitor cell
5
neutrophil
5
pancreas
5
regulatory T cell
5
skeletal muscle tissue
5
subcutaneous adipose tissue
5
substantia nigra
5
thyroid gland
5
tibial nerve
5
transverse colon
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
esophagus
4
foreskin keratinocyte
4
frontal cortex
4
gastrocnemius medialis
4
layer of hippocampus
4
muscle of trunk
4
natural killer cell
4
omental fat pad
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
Ammon's horn
3
HCT116
3
Peyer's patch
3
ascending aorta
3
blood cell
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
prostate gland
3
trophoblast
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
activated CD4-positive, alpha-beta T cell
2
adipocyte
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
blood
2
breast epithelium
2
bronchial epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
esophagus squamous epithelium
2
eye
2
fibroblast
2
fibroblast of breast
2
foreskin fibroblast
2
hepatocyte
2
hypothalamus
2
keratinocyte
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mesendoderm
2
mucosa of rectum
2
muscle
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
nucleus accumbens
2
parathyroid adenoma
2
right cardiac atrium
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skin fibroblast
2
stomach smooth muscle
2
temporal lobe
2
thoracic aorta
2
tongue
2
urinary bladder
2
uterus
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
Life stage
1
adult
Date released
3
January, 2022
1
May, 2020
1
May, 2021
Software used
3
qTLtools
1
chicago
1
limix
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP