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Schema
Citing CMDGA
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Annotation type
8
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
2
binding sites
2
histone modifications
1
variant allelic effects
0
eQTL
Annotation Category
3
Target gene links
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
stomach
20
heart
19
A549
19
HFFc6
18
CD14-positive monocyte
18
adrenal gland
18
brain
18
lung
18
small intestine
17
liver
16
muscle of arm
16
placenta
15
kidney
14
islet of Langerhans
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
adipose tissue
11
common myeloid progenitor, CD34-positive
11
macrophage
11
right lung
10
pituitary stalk
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
9
pericyte cell
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
9
spleen
8
B cell
8
GM12878
8
H9
8
endothelial cell
8
heart left ventricle
8
psoas muscle
8
smooth muscle cell
7
lymphocyte
7
monocyte
7
ovary
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
body of pancreas
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
natural killer cell
6
olfactory receptor cell
6
pancreas
6
subcutaneous adipose tissue
6
thyroid gland
6
transverse colon
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
T cell
5
adipocyte
5
caudate nucleus
5
coronary artery
5
gastrocnemius medialis
5
heart right ventricle
5
mesenchymal stem cell
5
mononuclear cell
5
muscle of trunk
5
neural progenitor cell
5
regulatory T cell
5
substantia nigra
5
tibial nerve
4
CyT49
4
HUES8
4
aorta
4
cerebellum
4
chorionic villus
4
endothelial cell of umbilical vein
4
esophagus
4
foreskin keratinocyte
4
frontal cortex
4
layer of hippocampus
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
omental fat pad
4
pancreatic delta cell
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 2 cell
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
astrocyte
3
blood cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
endocrine pancreas
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
luminal epithelial cell of mammary gland
3
mammary gland epithelial cell
3
mesendoderm
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
prostate gland
3
skeletal muscle tissue
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
3
vagina
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
articular chondrocyte
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
cartilage tissue
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
fibroblast of dermis
2
fibroblast of lung
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
microglial cell
Organ
3
epithelium
3
pancreas
Date released
1
January, 2021
1
May, 2021
1
November, 2021
Software used
2
abc
1
cicero
Lab
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
1
AMP
1
ENCODE3
1
T1D
relevant_life_stage!
unknown
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR263AKI
released
Annotation file set
: Target gene predictions of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR051SJQ
released
Annotation file set
: enhancer-gene predicton of pancreatic-ductal-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR946TIV
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of ductal
Lab:
Kyle Gaulton, UCSD
Project:
T1D