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Schema
Citing CMDGA
Clear Filters
Annotation type
24
accessible chromatin
24
gene expression
8
eQTL
7
target gene predictions
4
differential activity
4
variant allelic effects
3
Fine-mapped variants
1
caQTL
Annotation Category
7
Target gene links
Annotation type Category
17
DNase-seq
ChIP-seq
4
ATAC-seq
3
H3K27ac ChIP-Seq
2
pCHi-C
1
HiC
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
3
tissue
2
cell line
2
primary cell
Biosample term
3
liver
2
HepG2
2
hepatocyte
Organ
74
epithelium
57
embryo
54
uterus
38
connective tissue
31
blood
31
bodily fluid
31
pancreas
18
intestine
16
brain
13
heart
12
musculature of body
11
large intestine
10
pituitary gland
10
skin of body
8
lung
7
adrenal gland
7
liver
7
stomach
7
vasculature
6
blood vessel
5
adipose tissue
5
mammary gland
4
small intestine
3
esophagus
3
extraembryonic component
3
gonad
3
limb
3
ovary
3
thymus
2
artery
2
bone element
2
bone marrow
2
prostate gland
2
spleen
2
thyroid gland
2
vein
1
breast
1
bronchus
1
lymph node
1
lymphatic vessel
1
lymphoid tissue
1
penis
1
placenta
1
spinal cord
1
urinary bladder
Life stage
1
adult
Date released
3
March, 2020
3
May, 2021
1
November, 2021
Software used
4
abc
1
chicago
1
hiccups
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
6
AMP
1
ENCODE3
annotation_type_category!
ChIP-seq
biosample_term_name!
GM19099
Showing 7 of 7 results
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Download
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR494KQG
released
Annotation file set
: enhancer-gene predicton of liver-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR940SFE
released
Annotation file set
: A target gene prediction annotation in liver of DSR477FKL Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR605JRF
released
Annotation file set
: A target gene prediction annotation in Human Liver of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP