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Schema
Citing CMDGA
Clear Filters
Annotation type
19
gene expression
17
accessible chromatin
7
binding sites
5
histone modifications
4
target gene predictions
4
variant allelic effects
3
differential activity
2
candidate regulatory elements
2
chromatin state
Annotation Category
4
Target gene links
Annotation type Category
3
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
11
tissue
5
cell line
4
primary cell
1
in vitro differentiated cells
Biosample term
3
hepatocyte
1
hepatic stellate cell
Organ
114
epithelium
50
connective tissue
26
skin of body
24
pancreas
18
vasculature
12
blood vessel
11
mammary gland
9
extraembryonic component
9
kidney
8
heart
8
intestine
8
lung
7
penis
5
embryo
5
musculature of body
4
adrenal gland
4
brain
4
liver
4
stomach
4
vein
3
artery
3
bone element
3
bone marrow
3
bronchus
3
esophagus
3
eye
3
large intestine
3
lymphatic vessel
3
prostate gland
2
small intestine
1
gonad
1
limb
1
mouth
1
ovary
1
placenta
1
spinal cord
1
thyroid gland
1
uterus
Life stage
1
adult
1
unknown
Date released
2
September, 2022
1
May, 2021
1
November, 2021
Software used
2
abc
2
r
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
biosample_term_name!
conventional dendritic cell
Showing 4 of 4 results
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Download
FileSet
DSR361WHM
released
Annotation file set
: Target gene predictions for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR141KMS
released
Annotation file set
: Target gene predictions for BSS00553 hepatic stellate cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943ZIF
released
Annotation file set
: Target gene predictions of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR604IOP
released
Annotation file set
: enhancer-gene predicton of hepatocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP