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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
chromatin state
3
Fine-mapped variants
3
accessible chromatin
3
target gene predictions
2
eQTL
2
gene expression
2
variant allelic effects
Annotation Category
2
Gene expression levels
2
Genetic variant effects
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
2
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
17
epithelial cell of proximal tubule
15
glomerular endothelial cell
15
hepatocyte
15
monocyte
12
endothelial cell
12
islet of Langerhans
11
cardiomyocytes
9
EndoC_BH1
9
induced pluripotent stem cell
8
H1-hESC
8
kidney
7
T-helper 1 cell
7
T-helper 17 cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
neural progenitor cell
7
regulatory T cell
6
fibroblast
6
glomerular visceral epithelial cell
6
kidney interstitial cell
6
subcutaneous adipose tissue
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
heart
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
mesangial cell
4
adipose tissue
4
bone tissue
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
pancreatic ductal cell
4
right atrium auricular region
4
skeletal muscle fiber
4
smooth muscle cell
4
tibial nerve
4
vascular associated smooth muscle cell
3
CD8-positive, alpha-beta T cell
3
S-shaped body
3
Schwann cell
3
T-helper 2 cell
3
adipocyte
3
adult endothelial progenitor cell
3
body of pancreas
3
central memory CD8-positive, alpha-beta T cell
3
coronary artery
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
frontal cortex
3
heart left ventricle
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
memory B cell
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic polypeptide-secreting cell
3
tibial artery
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
Kupffer cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
T follicular helper cell
2
ascending aorta
2
basal cell
2
brain
2
cardiac muscle cell
2
caudate nucleus
2
cerebellum
2
cerebellum (Hemisphere)
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of esophagus
2
goblet cell
2
heart right ventricle
2
hepatic stellate cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
left cardiac atrium
2
leukocyte
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
natural killer cell
2
occipital lobe
2
omental fat pad
2
osteoblast
2
pancreatic stellate cell
2
putamen
2
renal cortical epithelial cell
2
renal vesicle
2
retina
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
smooth muscle cell of the coronary artery
2
visceral abdominal adipose tissue
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
adrenal gland
1
alpha-beta T cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
aorta
1
aortic valve
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
bladder
1
brain pericyte
1
breast - mammary tissue
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle fibroblast
1
cells - EBV-transformed lymphocytes
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cervix - ectocervix
1
cervix - endocervix
1
cholangiocyte
1
choroid plexus epithelial cell
1
colon - sigmoid
1
colon - transverse
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
dendritic cell
1
diencephalon
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
endothelial cell of umbilical vein
1
epithelial cell of distal tubule
1
erythroid lineage cell
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
excitatory neuron
1
fallopian tube
1
gastrocnemius medialis(Muscle - Skeletal)
1
glial cell
1
globus pallidus
1
granulosa cell
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
hypothalamus
1
inflammatory macrophage
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
kidney - cortex
1
kidney - medulla
1
kidney capillary endothelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney tubule cell
1
left renal cortex interstitium
1
left renal pelvis
1
left ventricle myocardium
Organ
4
limb
4
nerve
Life stage
3
adult
Date released
2
February, 2020
2
May, 2020
Software used
2
deltasvm
2
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
single cell RNA-seq
Showing 4 of 4 results
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Download
FileSet
DSR872IOC
released
Annotation file set
: Genetic variants with deltaSVM predictions in tibial nerve ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR168URY
released
Annotation file set
: Genetic variants with deltaSVM predictions in nerve tibial DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR703QSS
released
Annotation file set
: Gene expression summary of TPM of nerve tibial from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR435IKZ
released
Annotation file set
: Gene expression levels of nerve tibial from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP