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Schema
Citing CMDGA
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Annotation type
27
candidate regulatory elements
15
target gene predictions
13
chromatin state
8
binding sites
7
histone modifications
5
accessible chromatin
1
eQTL
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
1
RNA-seq
1
snATAC-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
1
luminal epithelial cell of prostatic duct
1
prostate
Organ
288
epithelium
218
kidney
65
connective tissue
56
pancreas
51
vasculature
36
brain
34
blood vessel
31
heart
25
liver
18
musculature of body
16
adipose tissue
13
limb
12
artery
10
embryo
6
intestine
4
bone element
4
esophagus
4
nerve
4
stomach
3
eye
3
lymphatic vessel
3
skin of body
3
ureter
2
adrenal gland
2
gonad
2
large intestine
2
lung
2
prostate gland
2
thyroid gland
2
uterus
2
vein
1
blood
1
bodily fluid
1
breast
1
bronchus
1
lymphoid tissue
1
mammary gland
1
mouth
1
ovary
1
pericardium
1
pituitary gland
1
spinal cord
1
spleen
1
testis
1
tongue
1
urinary bladder
1
vagina
Life stage
1
adult
Date released
1
February, 2024
1
March, 2024
Software used
1
deltasvm
1
r
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
RFA
2
AMP
files.file_type!
csv
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Download
FileSet
DSR617MMD
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Prostate.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670LSP
released
Annotation file set
: Variant allelic effects annotation of Luminal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP