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Citing CMDGA
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Annotation type
13
eQTL
11
gene expression
accessible chromatin
3
chromatin state
2
Fine-mapped variants
2
binding sites
2
sQTL
2
variant to gene
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
2
RNA-seq
1
ATAC-seq
1
Expression arrays
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
islet of Langerhans
1
EndoC_BH1
1
body of pancreas
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
Organ
3
pancreas
Life stage
2
adult
Date released
1
August, 2021
1
March, 2023
1
May, 2020
Software used
1
deltasvm
1
matrix-eQTL
1
qTLtools
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type!
accessible chromatin
Showing 3 of 3 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159BKA
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic islet ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP