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Citing CMDGA
Clear Filters
Annotation type
46
accessible chromatin
39
differential activity
28
target gene predictions
12
gene expression
4
variant allelic effects
2
other
1
binding sites
1
chromatin state
Annotation Category
4
Genetic variant effects
Annotation type Category
3
snATAC-seq
1
SNP-SELEX
Available data
4
bed bed3+
3
bigBed narrowPeak
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic polypeptide-secreting cell
1
purified protein and synthetic DNA oligo binding assay
Organ
3
epithelium
3
pancreas
Life stage
3
adult
Date released
3
February, 2024
1
February, 2023
Software used
3
deltasvm
1
betacells_cytokines_t1d
Lab
82
AMP-T2D consortium
53
Bing Ren, UCSD
4
Kyle Gaulton, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
biosample_term_name!
pancreatic alpha cell
Showing 4 of 4 results
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FileSet
DSR976GBT
released
Annotation file set
: High-throughput analysis of the binding of human transcription factors to common sequence variants by SNP-SELEX (in-silico assay)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR260PUK
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic gamma cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR450SMN
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic beta cell snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP