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Citing CMDGA
Clear Filters
Annotation type
171
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
1
other
0
chromatin state
Annotation Category
944
cis-regulatory elements
5
Genetic variant effects
2
Others
Annotation type Category
2
RNA-seq
1
ChIP-seq
Available data
3
bed bed3+
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
2
islet of Langerhans
2
tissue
1
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
2
pancreas
Life stage
1
adult
Date released
2
March, 2023
1
August, 2020
1
August, 2022
1
May, 2021
Software used
2
combined S2G strategy
2
qTLtools
1
limix
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP