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Citing CMDGA
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Annotation type
1671
candidate regulatory elements
1070
target gene predictions
977
histone modifications
907
chromatin state
810
binding sites
571
accessible chromatin
445
gene expression
159
eQTL
82
variant allelic effects
74
Fine-mapped variants
6
differential activity
5
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
DNase-seq
Available data
3
tsv
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
in vitro differentiated cells
Biosample term
2
islet of Langerhans
2
tissue
1
myocyte
Organ
2
pancreas
Date released
2
March, 2023
1
August, 2020
1
August, 2022
1
February, 2021
Software used
2
combined S2G strategy
2
qTLtools
1
altius-index
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP