Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
meQTL
3
pQTL
Annotation Category
6
Genetic variant effects
Annotation type Category
5248
ChIP-seq
3062
DNase-seq
547
RNA-seq
504
ATAC-seq
410
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
17
Expression arrays
12
snRNA-seq
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
3
quantitative proteomics
1
SNP-SELEX
Available data
4
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
3
tissue
Biosample term
2
cartilage tissue
1
cerebrospinal fluid
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
connective tissue
1
bodily fluid
Life stage
6
adult
Date released
3
August, 2021
3
May, 2021
Software used
3
limix
3
minfi
2
fastqtl
2
peer
1
r
Lab
4
AMP-T2D consortium
2
ITG
Project
4
AMP
2
ITG
RFA
4
AMP
2
ITG
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR135HUG
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 132 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR197ERC
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR301CXZ
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 196 individuals.
Lab:
AMP-T2D consortium
Project:
AMP