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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
31
islet of Langerhans
26
monocyte
24
retina
20
EndoC_BH1
20
pigmented layer of retina
19
endothelial cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
16
glomerular endothelial cell
15
CD14-positive monocyte
15
pancreatic ductal cell
14
liver
14
pancreatic alpha cell
14
pancreatic beta cell
14
pancreatic delta cell
13
regulatory T cell
12
adipocyte
12
hepatocyte
11
CD8-positive, alpha-beta T cell
11
adipose tissue
11
cardiomyocytes
11
macrophage
11
pancreatic acinar cell
11
subcutaneous adipose tissue
10
H1-hESC
10
T-helper 1 cell
10
kidney
10
pituitary stalk
9
B cell
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
cardiomyocytes (cardiac muscle cell)
8
embryonic stem cell
8
glomerular visceral epithelial cell
8
heart
8
mesenchymal stem cell
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
natural killer cell
8
neural progenitor cell
8
pancreatic stellate cell
8
smooth muscle cell
7
dendritic cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
retinal pigment epithelial cell
6
SGBS preadipocytes
6
cardiac precursors (cardiac muscle cell)
6
fibroblast
6
gamma-delta T cell
6
naive B cell
6
pancreas
6
pancreatic polypeptide-secreting cell
6
skeletal muscle fiber
6
stomach
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
heart left ventricle
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
osteoblast
5
pancreatic endothelial cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle myoblast
5
tibial nerve
5
type I muscle cell
5
type II muscle cell
4
T cell
4
T follicular helper cell
4
adult endothelial progenitor cell
4
body of pancreas
4
bone tissue
4
cartilage tissue
4
coronary artery
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of umbilical vein
4
frontal cortex
4
glutamatergic neuron
4
heart right ventricle
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
nephron progenitor
4
neutrophil
4
ovary
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle satellite cell
4
spleen
4
thymus
4
tibial artery
4
vascular associated smooth muscle cell
3
Ammon's horn
3
CD4-positive helper T cell
3
Cycling Mononuclear Phagocyte
3
HepG2
3
Jurkat
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
U937
3
activated CD4-positive, alpha-beta T cell
3
aorta
3
basal cell
3
brain
3
cardiac muscle cell
3
caudate nucleus
3
enterocyte
3
hepatic stellate cell
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
megakaryocyte
3
mesendoderm
3
naive regulatory T cell
3
occipital lobe
3
omental fat pad
3
pancreatic quiescent stellate cell
3
plasmacytoid dendritic cell
3
putamen
3
renal cortical epithelial cell
3
sigmoid colon
3
skeletal muscle tissue
3
small intestine
Date released
1
June, 2020
1
March, 2020
1
May, 2021
Software used
1
abc
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
assembly!
GRCh38
annotation_type!
hQTL
annotation_type_category!
ChIP-seq
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP