Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
target gene predictions
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
8
ChIP-seq
6
DNase-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
10
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
43
large intestine
18
sigmoid colon
14
transverse colon
8
colonic mucosa
7
HT-29
7
mucosa of rectum
6
SW480
6
muscle layer of colon
4
HCT-116 cell
4
RKO
3
HCT116
3
rectum smooth muscle tissue
2
colon epithelial cell
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
rectal smooth muscle tissue
Organ
8
intestine
8
large intestine
Life stage
6
adult
Date released
4
September, 2022
3
February, 2021
1
August, 2017
Software used
4
r
2
encode-ccres
1
chromhmm
1
macs
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
annotation_type!
variant to gene
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR809VPE
released
Annotation file set
: Candidate regulatory elements for BSS00228 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394QSN
released
Annotation file set
: Candidate regulatory elements for BSS00227 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR662EED
released
Annotation file set
: Target gene predictions for BSS00228 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273CDR
released
Annotation file set
: Target gene predictions for BSS00227 colonic mucosa from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR389KXN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR504AUN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE colonic mucosa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128RIZ
released
Annotation file set
: Histone modifications annotation for Digestive tract Colonic_mucosa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR420347
released
Annotation file set
: ChromHMM 13-state model for Colonic mucosa
Lab:
Stephen Parker, UMich
Project:
AMP