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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
65
stomach
63
heart
51
brain
50
lung
50
muscle of arm
49
kidney
47
small intestine
46
CD8-positive, alpha-beta T cell
46
adrenal gland
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
38
liver
37
thymus
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
islet of Langerhans
24
spleen
23
CD4-positive, alpha-beta memory T cell
22
adipose tissue
21
MCF-7
21
adipocyte
20
breast cancer cell
20
heart left ventricle
20
pigmented layer of retina
19
K562
18
foreskin keratinocyte
17
embryonic stem cell
17
foreskin fibroblast
17
neural progenitor cell
17
sigmoid colon
17
trophoblast cell
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
keratinocyte
15
monocyte
15
ovary
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreas
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
body of pancreas
13
cardiac muscle cell
13
pancreatic ductal cell
13
thyroid gland
13
upper lobe of left lung
12
EndoC_BH1
12
T cell
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
retinal pigment epithelial cell
12
skeletal muscle myoblast
12
skeletal muscle tissue
12
testis
12
tibial nerve
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell
11
osteoblast
10
HeLa-S3
10
HepG2
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
macrophage
10
mammary gland epithelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
pancreatic beta cell
10
pancreatic delta cell
10
prostate gland
9
GM12878
9
H9
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
liposarcoma
9
neurosphere
9
pancreatic alpha cell
9
subcutaneous adipose tissue
8
22Rv1
8
B-lymphoblastoid cell line
8
H1-hESC
8
HEK293
8
breast epithelium
8
fibroblast
8
fibroblast cell line
8
hepatocyte
8
left renal cortex interstitium
8
pituitary stalk
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
coronary artery
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
smooth muscle cell
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19240
6
GM23248
6
HL-60
6
KARPAS-422 cell
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
omental fat pad
6
pancreatic acinar cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skin fibroblast
6
thoracic aorta
6
tibial artery
6
tongue
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
H7-hESC
5
HCT-116 cell
5
HuH-7
5
LHCN-M2
5
LoVo cell
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
5
SW480
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
assembly!
GRCh38
award.project!
community
annotation_type!
gene expression
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP