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Schema
Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
47
small intestine
43
large intestine
18
sigmoid colon
14
transverse colon
11
Peyer's patch
8
colonic mucosa
7
HT-29
7
duodenal mucosa
7
mucosa of rectum
6
SW480
6
muscle layer of colon
6
muscle layer of duodenum
4
HCT-116 cell
4
RKO
3
HCT116
3
enterocyte
3
rectum smooth muscle tissue
2
colon epithelial cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
Disease term
2
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
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GRCh38
award.project!
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Showing 3 of 3 results
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Download
FileSet
DSR756UQP
released
Annotation file set
: Candidate regulatory elements for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP