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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
8
Gene expression levels
6
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
7
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
44
stomach
42
CD8-positive, alpha-beta T cell
41
heart
34
brain
33
kidney
33
lung
33
muscle of arm
30
placenta
30
retina
30
small intestine
29
adrenal gland
28
large intestine
28
muscle of leg
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
23
right lung
22
hematopoietic multipotent progenitor cell
22
thymus
21
B cell
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
renal pelvis
20
right kidney
19
spinal cord
18
left kidney
18
liver
17
spleen
16
embryonic stem cell
15
MCF-7
14
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
14
foreskin keratinocyte
13
adipocyte
12
K562
12
neuroblastoma cell
11
CD4-positive, alpha-beta T cell
11
heart left ventricle
11
mammary epithelial cell
11
neural progenitor cell
11
retinal pigment epithelial cell
10
Rhabdomyosarcoma
10
gastric cancer cell
10
natural killer cell
10
regulatory T cell
10
sigmoid colon
10
trophoblast cell
10
upper lobe of left lung
9
EndoC_BH1
9
adipose tissue
9
cardiac muscle cell
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
keratinocyte
9
liposarcoma
9
mesenchymal stem cell
9
neuronal stem cell
9
skeletal muscle myoblast
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
HepG2
8
Peyer's patch
8
T-helper 1 cell
8
bronchial epithelial cell
8
osteoblast
8
ovary
8
pancreas
8
psoas muscle
8
thyroid gland
8
transverse colon
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
body of pancreas
7
caudate nucleus
7
chorionic villus
7
endothelial cell
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
mature neutrophil
7
monocyte
7
mononuclear cell
7
prostate gland
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
H1-hESC
6
HL-60
6
HeLa-S3
6
IMR-90
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-MC
6
T cell
6
T-cell acute lymphoblastic leukemia
6
T-helper 17 cell
6
T-helper 2 cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
hESC cell
6
islet of Langerhans
6
layer of hippocampus
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neurosphere
6
right renal pelvis
6
skeletal muscle tissue
6
substantia nigra
6
temporal lobe
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
MG63
5
MM.1S
5
NAMALWA cell
5
NT2-D1 cell
5
OCI-LY7
5
PC-3
5
PC-9
5
RWPE1
5
SK-N-DZ
5
SK-N-SH
5
SW480
5
WERI-Rb-1
5
acute myeloid leukemia
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
heart right ventricle
5
lymphoblastoid cell line
5
muscle of trunk
5
osteosarcoma
5
prostate cancer cell line
5
tibial nerve
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KBM-7
4
LoVo cell
4
Mantle cell lymphoma
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY1
4
PANC-1 cell
4
RPMI8226
4
RS4-11 cell
4
SJSA1
4
SK-N-SH_RA
4
acute myeloid leukemia cell
4
angular gyrus
4
breast epithelium
4
choroid plexus epithelial cell
4
colonic mucosa
4
diffuse large B-cell lymphoma
4
epithelial cell of prostate
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
Organ
6
embryo
Life stage
2
embryonic
Date released
2
February, 2021
1
August, 2017
1
June, 2020
1
October, 2022
1
September, 2022
Software used
3
macs
2
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
assembly!
GRCh38
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP