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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
5
accessible chromatin
4
chromatin state
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
Target gene links
2
cis-regulatory elements
Annotation type Category
8
DNase-seq
4
ATAC-seq
4
ChIP-seq
4
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
40
stomach
39
heart
37
A549
33
lung
32
brain
32
muscle of arm
32
small intestine
31
adrenal gland
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
13
K562
12
heart left ventricle
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
10
ovary
10
pituitary stalk
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
adipocyte
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
heart right ventricle
8
natural killer cell
7
HeLa-S3
7
fibroblast of dermis
7
fibroblast of lung
7
pancreas
7
regulatory T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
caudate nucleus
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of umbilical vein
6
fibroblast of cardiac tissue
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
SK-N-SH
5
breast epithelium
5
coronary artery
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
hepatocyte
5
keratinocyte
5
neutrophil
5
skeletal muscle myoblast
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CD8-positive, alpha-beta T cell
4
HepG2
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
frontal cortex
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mesendoderm
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
skin fibroblast
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM12878
3
H1-hESC
3
H7-hESC
3
H9
3
HAP-1
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
astrocyte
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
macrophage
3
monocyte
3
osteoblast
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
right cardiac atrium
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
G401
Organ
8
connective tissue
Life stage
2
adult
2
unknown
Date released
4
May, 2021
4
September, 2022
Software used
4
abc
4
r
encode-ccres
Lab
4
AMP-T2D consortium
4
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
software_used.software.name!
encode-ccres
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP