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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
8
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
48
heart
45
stomach
42
CD8-positive, alpha-beta T cell
41
A549
41
kidney
39
brain
37
islet of Langerhans
34
lung
33
adrenal gland
33
liver
33
muscle of arm
33
placenta
33
small intestine
32
retina
31
monocyte
29
large intestine
28
muscle of leg
28
thymus
27
B cell
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
adipose tissue
23
neural progenitor cell
23
right lung
22
EndoC_BH1
22
adipocyte
22
endothelial cell
21
right kidney
20
breast cancer cell
20
epithelial cell of proximal tubule
20
pigmented layer of retina
20
regulatory T cell
20
renal pelvis
20
spinal cord
19
pancreatic ductal cell
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
K562
18
embryonic stem cell
18
glomerular endothelial cell
18
left kidney
17
MCF-7
17
hepatocyte
16
H1-hESC
16
heart left ventricle
16
induced pluripotent stem cell
16
natural killer cell
16
spleen
15
T-helper 1 cell
14
CD8-positive, alpha-beta memory T cell
14
T-helper 17 cell
14
keratinocyte
14
pancreatic alpha cell
13
mesenchymal stem cell
13
mononuclear cell
13
pancreatic beta cell
13
pancreatic delta cell
13
sigmoid colon
13
trophoblast cell
12
T cell
12
neuroblastoma cell
11
T-helper 2 cell
11
body of pancreas
11
foreskin fibroblast
11
macrophage
11
osteoblast
11
ovary
11
pancreas
11
psoas muscle
11
skeletal muscle myoblast
10
Rhabdomyosarcoma
10
endothelial cell of umbilical vein
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mammary gland epithelial cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
retinal pigment epithelial cell
10
subcutaneous adipose tissue
10
thyroid gland
10
tibial nerve
9
HepG2
9
cardiac muscle cell
9
cardiomyocytes
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
foreskin keratinocyte
9
gastrocnemius medialis
9
glomerular visceral epithelial cell
9
heart right ventricle
9
layer of hippocampus
9
liposarcoma
9
neutrophil
9
prostate gland
9
smooth muscle cell
9
transverse colon
8
B-lymphoblastoid cell line
8
GM12878
8
HeLa-S3
8
bronchial epithelial cell
8
fibroblast
8
fibroblast cell line
8
fibroblast of dermis
8
fibroblast of lung
8
mammary epithelial cell
8
muscle of trunk
8
pituitary stalk
8
skeletal muscle tissue
8
testis
7
IMR-90
7
Jurkat
7
cardiomyocytes (cardiac muscle cell)
7
coronary artery
7
endocrine pancreas
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
neuronal stem cell
7
right atrium auricular region
7
tibial artery
7
trophoblast
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
NAMALWA cell
6
Peyer's patch
6
aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
endometrium adenocarcinoma
6
hESC cell
6
immortal human breast epithelial cell line cell
6
mesendoderm
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
occipital lobe
6
omental fat pad
6
pancreatic stellate cell
6
skin fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive, alpha-beta T cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM12875
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM23248
5
Glomerular Capillary Endothelial Cell
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
assembly!
GRCh38
software_used.software.name!
encode-ccres
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP