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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
7
ChIP-seq
6
DNase-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
66
heart
66
stomach
56
kidney
52
brain
51
lung
50
muscle of arm
47
adrenal gland
47
small intestine
45
placenta
43
large intestine
42
muscle of leg
41
muscle of back
39
left lung
39
liver
37
islet of Langerhans
37
thymus
35
retina
34
right lung
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
left kidney
26
spleen
25
adipose tissue
23
spinal cord
22
heart left ventricle
20
pigmented layer of retina
18
sigmoid colon
16
body of pancreas
16
ovary
16
pancreas
16
psoas muscle
14
gastrocnemius medialis
14
subcutaneous adipose tissue
14
testis
14
thyroid gland
14
tibial nerve
14
transverse colon
13
caudate nucleus
13
heart right ventricle
13
muscle of trunk
13
skeletal muscle tissue
13
upper lobe of left lung
12
chorionic villus
12
layer of hippocampus
11
Peyer's patch
11
endocrine pancreas
11
prostate gland
10
omental fat pad
10
right atrium auricular region
10
substantia nigra
10
temporal lobe
9
aorta
9
breast epithelium
9
coronary artery
9
esophagus squamous epithelium
9
left renal cortex interstitium
9
left renal pelvis
9
right renal pelvis
9
tibial artery
9
trophoblast
8
ascending aorta
8
cerebellum
8
colonic mucosa
8
esophagus muscularis mucosa
8
frontal cortex
8
lower leg skin
8
right renal cortex interstitium
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
esophagus
7
eye
7
mucosa of rectum
7
parathyroid adenoma
7
putamen
7
stomach smooth muscle
7
thoracic aorta
7
tongue
7
uterus
7
vagina
6
Ammon's horn
6
angular gyrus
6
gastroesophageal sphincter
6
globus pallidus
6
limb
6
midbrain
6
muscle layer of colon
6
muscle layer of duodenum
6
occipital lobe
6
subcutaneous abdominal adipose tissue
6
urinary bladder
5
cartilage tissue
5
left cardiac atrium
5
right cardiac atrium
5
superior temporal gyrus
5
umbilical cord
4
Brodmann (1909) area 46
4
bone tissue
4
medulla oblongata
4
middle frontal gyrus
4
pons
4
right lobe of liver
3
amnion
3
cerebellar cortex
3
cortex of kidney
3
embryonic facial prominence
3
femur
3
germinal matrix
3
inferior parietal cortex
3
mucosa of stomach
3
prefrontal cortex
3
rectum smooth muscle tissue
3
suprapubic skin
3
visceral abdominal adipose tissue
2
muscle of leg
2
amygdala
2
arm bone
2
blood
2
breast carcinoma
2
cerebellum (Hemisphere)
2
chorion
2
dorsolateral prefrontal cortex
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
germinal center
2
hypothalamus
2
kidney epithelium
2
leg bone
2
mammary gland
2
middle frontal area 46
2
nucleus accumbens
2
placental basal plate
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of body
2
skin of forearm
2
skin of prepuce of penis
2
tissue
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
C1 segment of cervical spinal cord
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
corneal epithelium
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
gastrocnemius medialis(Muscle - Skeletal)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
left ventricle myocardium
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
minor salivary gland
1
mitral valve
1
morula
Organ
7
brain
Life stage
6
adult
Date released
4
September, 2022
2
February, 2021
1
August, 2017
Software used
4
r
2
encode-ccres
1
chromhmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
assembly!
GRCh38
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR562BNB
released
Annotation file set
: Candidate regulatory elements for BSS00220 cingulate gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR737JUT
released
Annotation file set
: Candidate regulatory elements for BSS00219 cingulate gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR729BQB
released
Annotation file set
: Target gene predictions for BSS00220 cingulate gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR452VKD
released
Annotation file set
: Target gene predictions for BSS00219 cingulate gyrus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692EEZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cingulate gyrus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031MJA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cingulate gyrus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR903521
released
Annotation file set
: ChromHMM 13-state model for cingulate gyrus
Lab:
Stephen Parker, UMich
Project:
AMP