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Annotation type
1648
candidate regulatory elements
1052
target gene predictions
865
histone modifications
804
binding sites
659
gene expression
515
accessible chromatin
163
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136
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72
chromatin state
39
eQTL
5
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5
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5
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4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
Available data
1
tsv
File set status
1
released
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
1
myocyte
Date released
1
February, 2021
Software used
1
altius-index
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
assembly!
GRCh38
organ_slims!
liver
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FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP