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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
9
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
66
heart
66
stomach
56
kidney
52
brain
50
muscle of arm
49
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
45
placenta
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
liver
37
islet of Langerhans
37
thymus
35
retina
33
B cell
33
hematopoietic multipotent progenitor cell
31
monocyte
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
25
spleen
24
adipose tissue
24
neural progenitor cell
23
CD4-positive, alpha-beta memory T cell
23
adipocyte
23
regulatory T cell
22
EndoC_BH1
22
endothelial cell
21
MCF-7
21
epithelial cell of proximal tubule
21
heart left ventricle
20
breast cancer cell
20
pigmented layer of retina
19
K562
19
glomerular endothelial cell
19
natural killer cell
19
pancreatic ductal cell
18
T-helper 1 cell
18
embryonic stem cell
18
foreskin keratinocyte
18
hepatocyte
17
T-helper 17 cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
H1-hESC
16
induced pluripotent stem cell
16
ovary
15
CD8-positive, alpha-beta memory T cell
15
body of pancreas
15
keratinocyte
15
mesenchymal stem cell
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreas
14
pancreatic alpha cell
14
tibial nerve
14
transverse colon
13
CD4-positive, alpha-beta T cell
13
cardiac muscle cell
13
heart right ventricle
13
pancreatic beta cell
13
pancreatic delta cell
13
skeletal muscle myoblast
13
skeletal muscle tissue
13
subcutaneous adipose tissue
13
testis
13
thyroid gland
12
T cell
12
T-helper 2 cell
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
osteoblast
12
retinal pigment epithelial cell
11
caudate nucleus
11
chorionic villus
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
HeLa-S3
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
mammary gland epithelial cell
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
prostate gland
10
smooth muscle cell
9
GM12878
9
H9
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
liposarcoma
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
aorta
8
breast epithelium
8
coronary artery
8
fibroblast
8
fibroblast cell line
8
left renal cortex interstitium
8
omental fat pad
8
pituitary stalk
8
right atrium auricular region
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12865
7
HT-29
7
cardiomyocytes (cardiac muscle cell)
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
left renal pelvis
7
lower leg skin
7
mature neutrophil
7
mesendoderm
7
substantia nigra
7
tibial artery
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12864
6
HAP-1
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
chondrocyte
6
choroid plexus epithelial cell
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
occipital lobe
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skeletal muscle satellite cell
6
skin fibroblast
6
thoracic aorta
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
organ_slims!
lung
biosample_term_name!
fibroblast of pulmonary artery
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP