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Schema
Citing CMDGA
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Annotation type
14
gene expression
2
accessible chromatin
2
candidate regulatory elements
2
variant allelic effects
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
20
pigmented layer of retina
7
EndoC_BH1
7
retinal pigment epithelial cell
4
endothelial cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
pancreatic ductal cell
2
aortic endothelial cell
2
capillary endothelial cell
2
glomerular visceral epithelial cell
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
1
breast epithelium
1
bronchial epithelial cell
1
choroid plexus epithelial cell
1
club cell
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular endothelial cell
1
glomerular epithelium
1
hepatocyte
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
neuroendocrine cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal principal cell
1
tracheal epithelial cell
1
type I pneumocyte
1
type II pneumocyte
1
urothelial cell
Organ
2
epithelium
1
kidney
1
lung
Date released
1
April, 2020
1
June, 2020
Software used
1
macs
Lab
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
RFA
1
AMP
1
LungMap2
assembly!
GRCh38
Showing 2 of 2 results
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Download
FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP