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Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
4
accessible chromatin
2
binding sites
2
variant allelic effects
1
caQTL
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
16
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
20
pigmented layer of retina
7
EndoC_BH1
7
retinal pigment epithelial cell
4
endothelial cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
pancreatic ductal cell
2
aortic endothelial cell
2
capillary endothelial cell
2
glomerular visceral epithelial cell
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
1
breast epithelium
1
bronchial epithelial cell
1
choroid plexus epithelial cell
1
club cell
1
dermis microvascular lymphatic vessel endothelial cell
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
glomerular endothelial cell
1
glomerular epithelium
1
hepatocyte
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
neuroendocrine cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endothelial cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal principal cell
1
tracheal epithelial cell
1
type I pneumocyte
1
type II pneumocyte
1
urothelial cell
Organ
4
epithelium
Life stage
1
adult
1
unknown
Date released
1
August, 2021
1
February, 2024
1
January, 2021
1
May, 2022
Software used
4
macs
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
3
AMP
1
T1D
RFA
2
AMP2
1
AMP
1
T1D
assembly!
GRCh38
organ_slims!
large intestine
Showing 4 of 4 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D