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Schema
Citing CMDGA
Clear Filters
Annotation type
6
gene expression
1
accessible chromatin
Annotation Category
6
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
scRNA-seq
3
snDropSeq
1
ATAC-seq
Available data
6
tsv
3
txt
1
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
56
kidney
31
right kidney
30
renal cortex interstitium
30
renal pelvis
27
left kidney
21
epithelial cell of proximal tubule
19
glomerular endothelial cell
11
glomerular visceral epithelial cell
9
left renal cortex interstitium
9
left renal pelvis
9
right renal pelvis
8
HEK293
8
right renal cortex interstitium
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
6
kidney glomerular epithelial cell
6
renal cortical epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
kidney connecting tubule epithelial cell
4
renal cell carcinoma
3
G401
3
S-shaped body
3
cortex of kidney
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
HEK293T
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
renal connecting tubule
2
renal principal cell
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
ureteric bud
Organ
7
kidney
Life stage
4
adult
3
fetal
Date released
6
February, 2021
1
August, 2021
Software used
6
r
1
macs
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
assembly!
GRCh38
Showing 7 of 7 results
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Download
FileSet
DSR611DVH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924MTE
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795NZZ
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Stroma cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR661ZJU
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of IPC from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR072UTY
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICb from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR924ZRB
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ICa from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708CXZ
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Interstitium from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP