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Schema
Citing CMDGA
Clear Filters
Annotation type
23
target gene predictions
7
candidate regulatory elements
7
chromatin state
2
binding sites
1
accessible chromatin
1
histone modifications
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ChIP-seq
Available data
6
bed bed9
1
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
6
GRCh38
Organism
7
Homo sapiens
Biosample type
7
cell line
Biosample term
18
brain
7
K562
5
temporal lobe
4
angular gyrus
4
caudate nucleus
4
layer of hippocampus
3
cingulate gyrus
3
substantia nigra
2
Brodmann (1909) area 46
2
GM12878
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
cerebellum
2
frontal cortex
1
A172
1
Ammon's horn
1
BE(2)-C
1
CMK
1
Daoy
1
GM06990
1
GM12875
1
GM12891
1
GM12892
1
GM19238
1
GM19239
1
GM19240
1
H54
1
HAP-1
1
HL-60
1
KBM-7
1
M059J
1
NB4
1
OCI-LY7
1
RPMI8226
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
globus pallidus
1
inferior parietal cortex
1
medulla oblongata
1
medulloblastoma
1
mid-frontal lobe
1
midbrain
1
middle frontal gyrus
1
pons
1
putamen
Disease term
6
Philadelphia-positive myelogenous leukemia
Organ
7
blood
7
bodily fluid
0
brain
Life stage
6
adult
Date released
6
September, 2022
1
August, 2017
Software used
7
chromhmm
Lab
6
AMP-T2D consortium
1
Stephen Parker, UMich
Project
7
AMP
RFA
7
AMP
assembly!
hg18
Showing 7 of 7 results
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Download
FileSet
DSR339UZM
released
Annotation file set
: Chromatin states for BSS01059 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188RKL
released
Annotation file set
: Chromatin states for BSS01057 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR776FEP
released
Annotation file set
: Chromatin states for BSS01056 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR252FIU
released
Annotation file set
: Chromatin states for BSS01039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR680EDW
released
Annotation file set
: Chromatin states for BSS01038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867LQE
released
Annotation file set
: Chromatin states for BSS00762 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP