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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
eQTL
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
13
monocyte
10
neural progenitor cell
9
kidney
6
hepatocyte
4
endothelial cell of hepatic sinusoid
4
islet of Langerhans
3
cardiac fibroblast
3
coronary artery
3
heart
3
heart left ventricle
3
osteoblast
3
pancreas
3
pancreatic ductal cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
cardiac muscle cell
2
endothelial cell
2
fibroblast
2
liver
2
omental fat pad
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic stellate cell
2
right atrium auricular region
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive helper T cell
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
T cell
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
choroid plexus epithelial cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
excitatory neuron
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hippocampal neuron
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
macrophage
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
occipital lobe
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pons
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
retinal pigment epithelial cell
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
spleen
1
superior temporal gyrus
1
thoracic aorta
1
tissue-resident macrophage
1
type B pancreatic cell
Organ
2
connective tissue
Life stage
2
adult
Date released
2
May, 2022
Software used
2
macs
Lab
2
Bing Ren, UCSD
Project
2
AMP
RFA
ENCODE3
2
AMP2
award.rfa!
ENCODE3
Showing 2 of 2 results
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Download
FileSet
DSR548JZG
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR988BGT
released
Annotation file set
: Accessible chromatin annotation of Fibroblast(sub-type 1) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP