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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
chromatin state
Annotation Category
Genetic variant effects
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
2
bed bed9
2
bigWig
File set status
4
released
Genome assembly (visualization)
11
hg19
4
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
20
fibroblast
19
pericyte cell
6
adipose tissue
6
fibroblast of cardiac tissue
4
omental fat pad
4
osteoblast
4
skin fibroblast
3
cardiac fibroblast
3
adipocyte
3
fibroblast of dermis
3
fibroblast of lung
3
hepatic stellate cell
3
mesenchymal stem cell
2
foreskin fibroblast
2
luteal cell
2
mesangial cell
2
pancreatic stellate cell
2
stromal cell
2
subcutaneous adipose tissue
1
GM23248
1
HT1080
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
brain pericyte
1
fat cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
stromal cell of bone marrow
Organ
4
adipose tissue
4
connective tissue
Life stage
4
adult
Date released
2
September, 2022
1
January, 2020
1
September, 2018
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_category!
Genetic variant effects
Showing 4 of 4 results
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Download
FileSet
DSR895SUM
released
Annotation file set
: Chromatin states for BSS01394 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR486UUL
released
Annotation file set
: Chromatin states for BSS01393 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR809PGU
released
Annotation file set
: Accessible chromatin annotation of adipose omental fat pad from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP